SPACE - Detection of Regulatory Elements with
Constrained Submotif Pattern Mining

Background

SPACE is a method for over-represented motifs in large sets of strings. Typical  applications include finding candidate transcription factor binding sites in DNA sequences. SPACE works by performing constrained frequent item set mining on submotifs.

Download

SPACE is available for download from here.

Feedback

Please send questions and comments to Dr. Sung Wing Kin.

References

  • Wijaya, E., Kanagasabai, R., Yiu, S.M. and Sung, W.K (2007) Detection of generic spaced motifs using submotif pattern mining Bioinformatics (23), 1476-1485.

 



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  National University of Singapore

  School of Computing - Bioinformatics Lab